fpd
0.2.5
Contents:
Installing
Accessing and Converting Merlin Binary Files
Converting Topspin app5 Files
Related Projects
News Archive
Change Log
fpd package
fpd
Docs
»
Index
Index
_
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
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Y
_
_print_testing_notes() (fpd.fpd_file.Merlin_hdr_file_parser method)
A
AC (fpd.fpd_file.Merlin_hdr_file_parser attribute)
airy_d() (in module fpd.tem_tools)
airy_fwhm() (in module fpd.tem_tools)
AlignNR (class in fpd.AlignNR_class)
alpha (fpd.AlignNR_class.AlignNR attribute)
annular_slice() (fpd.fpd_processing.VirtualAnnularImages method)
apply_image_trans() (in module fpd.tem_tools)
array_image() (in module fpd.synthetic_data)
B
background_erosion() (in module fpd.tem_tools)
bandpass() (in module fpd.fft_tools)
BandpassPlotter (class in fpd.fft_tools)
beta2bt() (in module fpd.mag_tools)
beta2phasegrad() (in module fpd.mag_tools)
bitdepth_bin (fpd.fpd_file.Merlin_binary_header_parser attribute)
bitdepth_data (fpd.fpd_file.Merlin_binary_header_parser attribute)
blob_log_detect() (in module fpd.tem_tools)
bt2beta() (in module fpd.mag_tools)
bt2phasegrad() (in module fpd.mag_tools)
C
calc_avg_fft() (fpd.fft_tools.BandpassPlotter method)
calc_data() (fpd.fft_tools.BandpassPlotter method)
center_of_mass() (in module fpd.fpd_processing)
cepstrum() (in module fpd.fft_tools)
cepstrum2() (in module fpd.fft_tools)
CM (fpd.fpd_file.Merlin_hdr_file_parser attribute)
connect() (fpd.fpd_file.DataBrowser method)
cpu_thread_lib_check() (in module fpd.fpd_processing)
criteria_bool (fpd.AlignNR_class.AlignNR attribute)
cross_tie() (in module fpd.mag_tools)
ctf() (in module fpd.tem_tools)
CubicImageInterpolator (class in fpd.fpd_file)
D
d_from_two_theta() (in module fpd.tem_tools)
DataBrowser (class in fpd.fpd_file)
decibel() (in module fpd.utils)
defocus_from_ctf_crossing() (in module fpd.tem_tools)
defocus_from_image() (in module fpd.tem_tools)
determine_read_chunks() (in module fpd.fpd_file)
disc_edge_properties() (in module fpd.fpd_processing)
disconnect() (fpd.fpd_file.DataBrowser method)
disk_image() (in module fpd.synthetic_data)
divergent() (in module fpd.mag_tools)
dnrmse (fpd.AlignNR_class.AlignNR attribute)
dpc_betax (fpd.segmented_dpc.SegmentedDPC attribute)
dpc_betay (fpd.segmented_dpc.SegmentedDPC attribute)
DPC_Explorer (class in fpd.dpc_explorer_class)
DummyFile (class in fpd.fpd_processing)
dyx (fpd.AlignNR_class.AlignNR attribute)
E
e_lambda() (in module fpd.tem_tools)
estimate() (fpd.tem_tools.TranslationTransform method)
exchange_length() (in module fpd.mag_tools)
F
fft2_diff() (in module fpd.fft_tools)
fft2_igrad() (in module fpd.fft_tools)
fft2_ilaplacian() (in module fpd.fft_tools)
fft2_laplacian() (in module fpd.fft_tools)
fft2rdf() (in module fpd.fft_tools)
fft_diff() (in module fpd.fft_tools)
fftcorrelate() (in module fpd.fft_tools)
find_circ_centre() (in module fpd.fpd_processing)
find_hdf5_objname_by_attribute() (in module fpd.fpd_file)
find_matching_images() (in module fpd.fpd_processing)
flush() (fpd.fpd_processing.DummyFile method)
fmt_ver (fpd.fpd_file.Merlin_hdr_file_parser attribute)
fn (fpd.fpd_file.Merlin_hdr_file_parser attribute)
format_coord() (fpd.fpd_file.DataBrowser method)
fpd (module)
fpd.AlignNR_class (module)
fpd.dpc_explorer_class (module)
fpd.fft_tools (module)
fpd.fpd_file (module)
fpd.fpd_io (module)
fpd.fpd_processing (module)
fpd.gwy (module)
fpd.mag_tools (module)
fpd.ransac_tools (module)
fpd.segmented_dpc (module)
fpd.segmented_dpc_class (module)
fpd.synthetic_data (module)
fpd.tem_tools (module)
fpd.utils (module)
fpd_data_view() (in module fpd.synthetic_data)
fpd_to_hyperspy() (in module fpd.fpd_file)
fpd_to_tuple() (in module fpd.fpd_file)
fresnel() (in module fpd.mag_tools)
fresnel_paraxial() (in module fpd.mag_tools)
friedel_filter() (in module fpd.tem_tools)
G
gaus_im_div1d() (in module fpd.utils)
gaussian_2d() (in module fpd.utils)
gaussian_2d_peak_fit() (in module fpd.utils)
gaussian_fwhm() (in module fpd.utils)
get_image_sequence() (fpd.dpc_explorer_class.DPC_Explorer method)
get_memmap() (fpd.fpd_file.MerlinBinary method)
grad() (in module fpd.mag_tools)
H
handle_close() (fpd.fpd_file.DataBrowser method)
hd (fpd.fpd_file.Merlin_hdr_file_parser attribute)
hdf5_dm_tags_to_dict() (in module fpd.fpd_file)
hdf5_dm_to_bin() (in module fpd.fpd_file)
hdf5_fpd_to_bin() (in module fpd.fpd_file)
hdf5_src_to_file() (in module fpd.fpd_file)
header_bytesize (fpd.fpd_file.Merlin_binary_header_parser attribute)
hkl_cube() (in module fpd.tem_tools)
hs (fpd.fpd_file.Merlin_binary_header_parser attribute)
(fpd.fpd_file.Merlin_hdr_file_parser attribute)
I
i (fpd.AlignNR_class.AlignNR attribute)
im2fftrdf() (in module fpd.fft_tools)
images (fpd.AlignNR_class.AlignNR attribute)
images_aligned (fpd.AlignNR_class.AlignNR attribute)
init_fig() (fpd.fft_tools.BandpassPlotter method)
init_plots() (fpd.fft_tools.BandpassPlotter method)
int_factors() (in module fpd.utils)
interpolate_image() (fpd.fpd_file.CubicImageInterpolator method)
interrupt (fpd.AlignNR_class.AlignNR attribute)
,
[1]
L
lambda_iak() (in module fpd.tem_tools)
landau() (in module fpd.mag_tools)
lattice_angles() (in module fpd.tem_tools)
lattice_from_inliers() (in module fpd.tem_tools)
lattice_inlier() (in module fpd.tem_tools)
lattice_magnitudes() (in module fpd.tem_tools)
lattice_resolver() (in module fpd.tem_tools)
load_gla_dpc() (in module fpd.segmented_dpc)
M
mag2tesla() (in module fpd.mag_tools)
mag_phase() (in module fpd.mag_tools)
make_ref_im() (in module fpd.fpd_processing)
make_updated_fpd_file() (in module fpd.fpd_file)
map_image_function() (in module fpd.fpd_processing)
mdpc_betax (fpd.segmented_dpc.SegmentedDPC attribute)
mdpc_betay (fpd.segmented_dpc.SegmentedDPC attribute)
median_lc() (in module fpd.utils)
median_of_difference_lc() (in module fpd.utils)
Merlin_binary_header_parser (class in fpd.fpd_file)
Merlin_hdr_file_parser (class in fpd.fpd_file)
MerlinBinary (class in fpd.fpd_file)
mode (fpd.fpd_file.Merlin_hdr_file_parser attribute)
N
nc_correct() (in module fpd.tem_tools)
nearest_int_factor() (in module fpd.utils)
neel() (in module fpd.mag_tools)
nrmse (fpd.AlignNR_class.AlignNR attribute)
nrmse() (in module fpd.fpd_processing)
O
on_motion() (fpd.fpd_file.DataBrowser method)
on_press() (fpd.fpd_file.DataBrowser method)
on_release() (fpd.fpd_file.DataBrowser method)
on_scroll() (fpd.fft_tools.BandpassPlotter method)
optimise_lattice() (in module fpd.tem_tools)
optimise_trans() (in module fpd.tem_tools)
orb_trans() (in module fpd.tem_tools)
P
pad_image() (in module fpd.fft_tools)
params (fpd.fpd_file.Merlin_binary_header_parser attribute)
(fpd.tem_tools.TranslationTransform attribute)
phase_correlation() (in module fpd.fpd_processing)
phasegrad2bt() (in module fpd.mag_tools)
phasegrad2period() (in module fpd.mag_tools)
plot() (fpd.AlignNR_class.AlignNR method)
,
[1]
(fpd.fpd_processing.VirtualAnnularImages method)
plot_cmap_ordinates() (fpd.dpc_explorer_class.DPC_Explorer method)
plot_dif() (fpd.fpd_file.DataBrowser method)
plot_nav_im() (fpd.fpd_file.DataBrowser method)
poisson_noise() (in module fpd.synthetic_data)
R
r (fpd.dpc_explorer_class.DPC_Explorer attribute)
radial_profile() (in module fpd.fpd_processing)
radial_profiles() (in module fpd.fpd_processing)
ransac_1D_fit() (in module fpd.ransac_tools)
ransac_im_fit() (in module fpd.ransac_tools)
raw_mode (fpd.fpd_file.Merlin_binary_header_parser attribute)
readGSF() (in module fpd.gwy)
rebinA() (in module fpd.fpd_processing)
rn (fpd.dpc_explorer_class.DPC_Explorer attribute)
rotate_vector() (in module fpd.fpd_processing)
rutherford_cs() (in module fpd.tem_tools)
S
save() (fpd.dpc_explorer_class.DPC_Explorer method)
save_data() (fpd.fpd_processing.VirtualAnnularImages method)
scherzer_defocus() (in module fpd.tem_tools)
segmented_detectors() (in module fpd.synthetic_data)
segmented_dpc_signals() (in module fpd.synthetic_data)
SegmentedDPC (class in fpd.segmented_dpc)
(class in fpd.segmented_dpc_class)
seq_image_array() (in module fpd.utils)
set_yx() (fpd.dpc_explorer_class.DPC_Explorer method)
shift_array() (in module fpd.synthetic_data)
shift_im() (in module fpd.synthetic_data)
shift_images() (in module fpd.synthetic_data)
slice_indices() (in module fpd.fpd_file)
smooth7() (in module fpd.utils)
snr_single_image() (in module fpd.utils)
snr_single_image_wl() (in module fpd.utils)
snr_two_image() (in module fpd.utils)
strain() (in module fpd.tem_tools)
strict (fpd.fpd_file.Merlin_hdr_file_parser attribute)
stripes() (in module fpd.mag_tools)
sum_ax() (in module fpd.fpd_processing)
sum_dif() (in module fpd.fpd_processing)
sum_im() (in module fpd.fpd_processing)
synthetic_aperture() (in module fpd.fpd_processing)
synthetic_images() (in module fpd.fpd_processing)
synthetic_lattice() (in module fpd.tem_tools)
T
t_im (fpd.dpc_explorer_class.DPC_Explorer attribute)
tem_dpc() (in module fpd.mag_tools)
tesla2G() (in module fpd.mag_tools)
tesla2mag() (in module fpd.mag_tools)
tesla2Oe() (in module fpd.mag_tools)
tie() (in module fpd.mag_tools)
Timer (class in fpd.utils)
tn (fpd.dpc_explorer_class.DPC_Explorer attribute)
to_array() (fpd.fpd_file.MerlinBinary method)
topspin_app5_to_hdf5() (in module fpd.fpd_io)
tr_im (fpd.dpc_explorer_class.DPC_Explorer attribute)
translation (fpd.tem_tools.TranslationTransform attribute)
TranslationTransform (class in fpd.tem_tools)
U
uniform() (in module fpd.mag_tools)
unseq_image_array() (in module fpd.utils)
update_calibration() (in module fpd.fpd_file)
update_dif_plot() (fpd.fpd_file.DataBrowser method)
update_fact() (fpd.fft_tools.BandpassPlotter method)
update_mask() (fpd.fft_tools.BandpassPlotter method)
update_mode() (fpd.fft_tools.BandpassPlotter method)
update_norm() (fpd.fft_tools.BandpassPlotter method)
update_plots() (fpd.fft_tools.BandpassPlotter method)
V
vector_combinations() (in module fpd.tem_tools)
virtual_apertures() (in module fpd.fpd_processing)
virtual_images() (in module fpd.fpd_processing)
VirtualAnnularImages (class in fpd.fpd_processing)
vortex() (in module fpd.mag_tools)
W
warp() (fpd.AlignNR_class.AlignNR method)
,
[1]
write() (fpd.fpd_processing.DummyFile method)
write_hdf5() (fpd.fpd_file.MerlinBinary method)
writeGSF() (in module fpd.gwy)
X
x (fpd.dpc_explorer_class.DPC_Explorer attribute)
Y
y (fpd.dpc_explorer_class.DPC_Explorer attribute)